How Probiotics Are Counted in CFU and AFU

A vitamin is weighed. A probiotic is counted, because what it holds is a population of living cells. The two units used to count them, what each one sees, and how to read the number printed on an Akkermansia label.

In brief

A CFU, or colony-forming unit, counts the cells that grow into colonies on a plate. An AFU, or active fluorescent unit, counts intact, active cells one by one with flow cytometry, so nothing has to grow first.

Organisms that are slow or sensitive to oxygen, such as Akkermansia muciniphila, are hard to grow on a plate, which is why some labels state their count in AFU. The footnote beside the count says when it was measured.

I

A Number That Describes a Living Population

Most ingredients on a label are expressed by weight. Three hundred milligrams of a mineral is three hundred milligrams on the day it is made and, give or take, on the day it is opened. A probiotic does not behave that way. What it contains is a population of microorganisms, and a population is described by how many individuals it holds, not only by how much it weighs.

That is why probiotic labels carry a second kind of number. Alongside the milligrams, they state a count of cells, written in a unit that names the method used to count them. The two units met most often are the colony-forming unit, or CFU, and the active fluorescent unit, or AFU. They answer related questions in different ways, and reading them well starts with knowing what each one was built to measure.

The difference matters because counting living things is never as simple as counting objects. Cells can be active or dormant, single or clumped together, quick to grow in a laboratory or slow and demanding. Each counting method makes choices about which of those cells it can see. The Codeage guide to enzymes and probiotics in digestion sets out where probiotics sit in the broader picture; this article stays with the number itself.

Seen this way, a count is less a quantity than a method made visible. The unit tells the reader how the cells were counted, and the small print beside it tells the reader when.

Every count is a method

A Population, Not a Powder

The unit printed on the label says which method was used to count it.

II

The Colony on the Plate and What It Can See

The colony-forming unit is the long-established unit of microbiology. To arrive at it, a sample is diluted in steps and spread onto a nutrient medium in a dish, then incubated at a set temperature for a set time. Cells that can divide under those conditions multiply until each one becomes a visible colony. The colonies are counted, the dilution is factored back in, and the result is reported as colony-forming units.

The name is careful for a reason. A single colony may grow from one cell or from a small cluster that stayed together, so the unit counts the starting points of growth rather than individual cells. The method has a clear strength: a colony is direct evidence that something in the sample was alive and able to reproduce in the laboratory.

Glass petri dish with small round colonies on a pale nutrient gel, seen from above

That same requirement defines its limits. A plate count sees only the cells able to grow on that medium, in that atmosphere, within that time. Cells that are alive but not dividing under those conditions, sometimes described as viable but non-culturable, do not form colonies and are not counted. Organisms that grow readily on a plate suit the method well, including the hardy spore formers described in the Codeage guide to soil-based organism probiotics.

For organisms that are fastidious, slow or sensitive to oxygen, the plate becomes a narrower window. The count still means something precise, but it describes what grew on the dish rather than everything that was in the sample.

Two ways to count

CFU and AFU, Side by Side

Each unit answers a slightly different question about the same population. Neither one describes what an organism does in the body.

How the colony-forming unit and the active fluorescent unit are each measured.
Question CFU, colony-forming unit AFU, active fluorescent unit
Method Plate count. Cells are grown on a nutrient medium and the resulting colonies are counted. Flow cytometry. Stained cells pass one at a time through a laser and are counted as they fluoresce.
What is counted Starting points of growth, each one a cell or a small cluster able to divide on the plate. Individual cells whose stain signals an intact membrane and active metabolism.
What can go uncounted Cells that are alive but do not grow under the conditions of the test. Cells outside the stain's signal, depending on the dyes and settings chosen.
Time to a result Usually days, set by how fast the organism grows. Usually hours, since nothing has to grow first.

III

Counting Cells One by One With Light

The active fluorescent unit comes from a different instrument. In flow cytometry, a sample is mixed with fluorescent dyes and passed in a narrow stream through a laser beam, one cell at a time. Each cell scatters the light and, depending on the dyes it has taken up, glows at particular wavelengths. Detectors record every event, and the instrument sorts them by the signals they give.

A thin stream of liquid crossing a laser beam, with tiny particles glowing as they pass

The dyes do the interpretive work. Some pass only through damaged membranes, others are converted into a fluorescent form by the enzymes of an active cell. Read together, they let the instrument distinguish cells that are intact and metabolically active from those that are not. The cells counted in the active group are reported as active fluorescent units. Because nothing needs to grow first, the method can see active cells that would not have formed a colony on a plate.

The approach has a formal basis. ISO 19344:2015, the international standard for counting lactic acid bacteria by flow cytometry, set out a method for counting active and total cells in starter cultures and probiotic dairy products. A review by Wilkinson, 2018, on flow cytometry and bacterial viability in probiotic products, in Trends in Food Science and Technology, compared the method with plate counting and discussed the staining and validation work it depends on.

Flow cytometry has its own choices to make. The dyes, the instrument settings and the way cells are gated all shape the final figure, which is why a count is always tied to a defined method. The two units do not convert into one another at a set ratio; each stands on its own procedure.

Studies referenced were conducted independently and did not involve any specific Codeage product.

A plate sees what grows.
A laser sees what is active.
The unit tells you which one looked.

IV

Why Akkermansia Is Counted This Way

Akkermansia muciniphila lives in the mucus layer that lines the colon, an environment with very little oxygen. Its original description in 2004 characterized it as strictly anaerobic and as an organism that grows on mucin, the glycoprotein that gives intestinal mucus its texture. Outside that setting, it is demanding to grow. It needs an oxygen-free atmosphere, specific nutrients and patience on the bench.

A sealed glass vessel of translucent teal gel with tiny oval forms suspended inside

Those traits make a plate count a narrow view of an Akkermansia population. Cells exposed to small amounts of oxygen during handling, or simply slow to resume dividing, may be present and active without forming colonies in the time allowed. A method that counts active cells directly avoids that bottleneck, which is why the Akkermansia 500 Ultra label states its count in AFU.

Delivery is part of the same picture. An anaerobe in a capsule has to travel past the acidity of the stomach to reach the lower intestine where it naturally lives. An enteric coating is a capsule layer designed to resist dissolving in the stomach and to open further along the digestive tract. Akkermansia sits in Systemic Balance, the fourth pillar of The Longevity Code, the place the framework gives to the inner ecology of the gut and the body's systems.

Reading the label

Four Details That Give the Count Its Meaning

A count on a probiotic label is only as clear as the details printed around it. These are the ones to look for, read here on the Akkermansia 500 Ultra panel.

A translucent teal glass sphere resting beside a woven cream form on pale stone
  1. 01The unit

    CFU or AFU

    The unit names the counting method. On this label the count is given as 500 million AFU, so it was measured by flow cytometry rather than by plate count.

  2. 02The moment

    Manufacture or Expiration

    A living population changes in storage, so a count refers to a point in time. Here the footnote reads at time of expiration, the end of the product's dated life.

  3. 03The strain

    Species and Strain Name

    A full name identifies the organism precisely. The panel lists Akkermansia muciniphila AH39 at 150 mg per capsule, with the count stated beneath the weight.

  4. 04The companion

    The Fiber Beside It

    A prebiotic fiber paired with a living organism makes the formula a synbiotic. This one adds 276 mg of chicory inulin, a fiber fermented by bacteria in the colon.

V

What the Label Holds, Read Line by Line

The Supplement Facts panel of Akkermansia 500 Ultra is short. The serving size is one capsule, and the organism, its count and the footnote that dates it sit at the top of the panel, in the order set out above.

Beside the organism sits 276 mg of chicory inulin, a chain of fructose units that the human body does not digest on its own and that reaches the colon intact, where resident bacteria ferment it. Pairing the two follows the logic of a synbiotic, an organism and a fiber chosen to accompany it.

The other ingredients are hypromellose, which forms the vegetarian capsule, L-leucine, silica and the enteric coating. The jar holds 90 capsules, which at one capsule a serving is 90 servings.

Questions

What People Ask Most

What is the difference between CFU and AFU?
CFU, the colony-forming unit, counts the starting points of growth that form colonies on a nutrient plate. AFU, the active fluorescent unit, counts individual cells that flow cytometry identifies as intact and active, without waiting for them to grow.
Can CFU be converted into AFU?
No. The two units do not convert into one another at a set ratio. Each figure is tied to its own counting procedure.
Why is Akkermansia counted in AFU?
Akkermansia muciniphila is strictly anaerobic and demanding to grow on a plate. A method that counts active cells directly avoids the need for them to form colonies first.
What does "at time of expiration" mean on a label?
It means the stated count applies to the last day of the product's dated life, not to the day it was made.
What is a synbiotic?
A synbiotic pairs a living organism with a prebiotic fiber chosen to accompany it, such as chicory inulin, a fiber fermented by bacteria in the colon.

Living cells change in storage.
The footnote names the moment.

Read it, and the number holds.

Codeage, Systemic Balance, Pillar 04

Akkermansia 500 Ultra

Akkermansia muciniphila AH39 paired with chicory inulin in a hypromellose vegetarian capsule with an enteric coating. The count is stated in AFU, measured at time of expiration.

Strain
AH39, 150 mg
Count
500 million AFU
Chicory inulin
276 mg
Servings
90 per jar

Formulated without dairy, soy, or gluten. Non-GMO. Manufactured in the USA in a cGMP-certified facility with global ingredients.

Shop Akkermansia 500 Ultra

Continue reading

Further Reading from the Codeage Library

Codeage, The Longevity Code

A System Built for the Long View

The Longevity Code is a four pillar daily system, with every formula mapped to a specific dimension of how the body sustains itself across time.

Join The Code

Codeage, The Longevity Code

Studies referenced were conducted independently and did not involve any specific Codeage product.

CFU count is measured at time of manufacture and may naturally vary over time.

Anyone who is pregnant or nursing, under 18, has a known medical condition or takes medication should speak with a qualified healthcare professional before using this product. Do not exceed the suggested use.

This article is educational and is not intended to diagnose, treat, cure, or prevent any disease. These statements have not been evaluated by the Food and Drug Administration.

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